Author

Thomas Ried

National Institutes of HealthORCID 0000-0002-0767-6009Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Aaron F. Alexander‐BlochiD· 1 shared Alejandro A. SchäfferiD· 1 shared Andrew R. ZinniD· 1 shared Armin RaznahaniD· 1 shared Daniel H. GeschwindiD· 1 shared Danny Wangsa· 1 shared Declan MurphyiD· 1 shared Edward Michael GertziD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Aaron F. Alexander‐BlochORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data

Haoyun Lei, Edward Michael Gertz, Alejandro A. Schäffer, Xuecong Fu, Yifeng Tao, Kerstin Heselmeyer‐Haddad, Irianna Marie Torres, Guibo Li, Liqin Xu, Yong Hou, Kui Wu, Xulian Shi, Michael C. Dean, Thomas Ried, Russell S. Schwartz

The paper develops computational methods combining sequencing and miFISH data to improve accurate inference of clonal copy number evolution in tumors.

Bioinformatics · Jul 5, 2021Peer-reviewedBioinformatics

Sex Chromosome Dosage Effects On Gene Expression In Humans

Armin Raznahan, Neelroop Parikshak, V. Ravi Chandran, Jonathan D. Blumenthal, LIV S. CLASEN, Aaron F. Alexander‐Bloch, Andrew R. Zinn, Danny Wangsa, Jasen Lee Wise, Declan Murphy, Patrick Bolton, Thomas Ried, JUDITH LEVINE ROSS, Jay N. Giedd, Daniel H. Geschwind

The paper investigates how sex chromosome dosage affects gene expression in humans by analyzing diverse aneuploidies and identifies SCD-sensitive genes and their regulatory networks.

Proceedings of the National Academy of Sciences · Jun 26, 2018Peer-reviewedGenomics