Author

Hubert Charles

Institut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementORCID 0000-0002-0809-4705Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 4 Approach:experimental assay· 4 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:proteomics· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Federica CalevroiD· 3 shared Patrice Bâa-PuyouletiD· 3 shared Agnès VallieriD· 2 shared Nicolas ParisotiD· 2 shared Abdelaziz HeddiiD· 1 shared Alex Di GenovaiD· 1 shared Alexandra Lehmkuhl GerberiD· 1 shared Amélie Lafont· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersBioinformatics

Federica CalevroORCID

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4 papers

Recent·Most cited

ArtSymbioCyc, a metabolic network database collection dedicated to arthropod symbioses: a case study, the tripartite cooperation in Sipha maydis

Patrice Bâa-Puyoulet, Léo Gerlin, Nicolas Parisot, Sergio Peignier, François Renoz, Federica Calevro, Hubert Charles

The paper introduces ArtSymbioCyc, a database for arthropod symbiosis metabolism, and applies it to study the tripartite symbiosis in Sipha maydis, showing interdependence in amino acid and vitamin metabolism.

mSystems · Mar 21, 2025Peer-reviewedBioinformatics

Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum

Natacha Koenig, Patrice Bâa-Puyoulet, Amélie Lafont, Isis Lorenzo-Colina, Vincent Navratil, Maxime Leprêtre, Kevin Sugier, Nicolas Delorme, Laura Garnero, H. Quéau, Jean‐Charles Gaillard, Mélodie Kielbasa, Sophie Ayciriex, Federica Calevro, Arnaud Chaumot, , Davide Degli Esposti

This study reconstructs the metabolic pathways of the amphipod Gammarus fossarum using multi-omics data, revealing organ-specific metabolic profiles and validating enzyme expression through proteomics.

bioRxiv · May 4, 2024 · PreprintMolecular Biology

Diversity of Insecticidal PA1b Homologs among Legume Seeds from Middle Eastern Region

Fatima Diya, Hubert Charles, Agnès Vallier, Lamis Karaki, Linda Kfoury, Carlos Henrique Tomich de Paula da Silva, F. Rizk

The paper characterizes PA1b homologs in Middle Eastern legumes, finding structural conservation and diversification, and demonstrates their insecticidal activity.

bioRxiv · Dec 4, 2023 · PreprintBioinformatics

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Nicolas Parisot, Carlos Vargas-Chávez, Clément Goubert, Patrice Bâa-Puyoulet, Séverine Balmand, Louis Beranger, Caroline Blanc, Aymeric Bonnamour, Matthieu Boulesteix, Nelly Burlet, Federica Calevro, Patrick Callaerts, Théo Chancy, Hubert Charles, Stefano Colella, , Abdelaziz Heddi

The paper presents the genome of Sitophilus oryzae, revealing high transposable element content and host-symbiont metabolic interactions.

BMC Biology · Nov 8, 2021Peer-reviewedGenomics