Author

Alexandra L. McCorkindale

Harvard UniversityORCID 0000-0002-0840-0784Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Organism:Drosophila· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Chinmay J. Shukla· 2 shared Rafael A. IrizarryiD· 2 shared Chiara GerhardingeriD· 1 shared David M ShechneriD· 1 shared Irmtraud M. MeyeriD· 1 shared Irwin JungreisiD· 1 shared John L. RinniD· 1 shared Keegan D. KorthaueriD· 1 shared

Activity by Year

2018-2019 · peak 1/yr

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10 top collaborators · 30 mutual co-author links

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2 shared papersDevelopmental Biology

Chinmay J. Shukla

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2 papers

Recent·Most cited

A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

Alexandra L. McCorkindale, Philipp Wahle, Sascha Werner, Irwin Jungreis, Peter Menzel, Chinmay J. Shukla, Rúben Lopes Pereira Abreu, Rafael A. Irizarry, Irmtraud M. Meyer, M Kellis, Robert P. Zinzen

The paper creates a spatiotemporal gene expression atlas of Drosophila embryonic neurogenesis, revealing dynamic lncRNA expression patterns and cell type-specific gene regulation.

Development · Mar 15, 2019Peer-reviewedDevelopmental Biology

High-throughput identification of RNA nuclear enrichment sequences

Chinmay J. Shukla, Alexandra L. McCorkindale, Chiara Gerhardinger, Keegan D. Korthauer, Moran N. Cabili, David M Shechner, Rafael A. Irizarry, Philipp G. Maass, John L. Rinn

The paper identifies RNA sequences responsible for nuclear enrichment in lncRNAs using a modified MPRA approach and validates findings with smRNA-FISH.

The EMBO Journal · Jan 15, 2018Peer-reviewedGenomics