Author

Martijn Holterman

Wageningen University & ResearchORCID 0000-0002-1134-6555Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Genetics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:whole-genome sequencing· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Johannes HelderiD· 5 shared Joris J.M. van SteenbruggeiD· 4 shared Mark G. SterkeniD· 4 shared Peter ThorpeiD· 3 shared S.J.J. van den ElseniD· 3 shared Aska GoverseiD· 2 shared Geert SmantiD· 2 shared Jose L. Lozano‐TorresiD· 2 shared

Activity by Year

2020-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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5 shared papersGenomics

Johannes HelderORCID

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5 papers

Recent·Most cited

GeneticsNature CommunicationsPeer-reviewedOct 19, 2022

The genome and lifestage-specific transcriptomes of a plant-parasitic nematode and its host reveal susceptibility genes involved in trans-kingdom synthesis of vitamin B.

Shahid Siddique, Zoran S. Radaković, Clarissa Hiltl…·Sebastian Eves‐van den Akker

The paper identifies susceptibility genes involved in trans-kingdom vitamin B synthesis between a plant-parasitic nematode and its host, revealing a horizontal gene transfer critical for parasitism.

85 citationstop 1%

plant (other)whole-genome sequencing

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GenomicsbioRxivPreprintNov 1, 2021

Comparative genomics among three cyst nematode species reveals distinct evolutionary histories among effector families and an irregular distribution of effector-associated promoter motifs

Joris J.M. van Steenbrugge, S.J.J. van den Elsen, Martijn Holterman…·Johannes Helder

DOI 10.1101/2021.11.01.466756

whole-genome sequencingexperimental assay

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GenomicsBMC GenomicsPeer-reviewedAug 11, 2021

Comparative Genomics of two Inbred Lines of the Potato Cyst Nematode Globodera rostochiensis reveals disparate Effector Family-specific Diversification Patterns

Joris J.M. van Steenbrugge, S.J.J. van den Elsen, Martijn Holterman…·Johannes Helder

The paper generates two new reference genomes for G. rostochiensis inbred lines and identifies effector family-specific diversification patterns that differ between pathotypes.

17 citations

whole-genome sequencingstatistical model

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Molecular BiologyMicroorganismsPeer-reviewedFeb 19, 2021

Characterization of the habitat- and season-independent increase in fungal biomass induced by the invasive giant goldenrod and its impact on the fungivorous nematode community

Paula Harkes, Lisa J. M. van Heumen, S.J.J. van den Elsen…·Johannes Helder

The paper investigates how the invasive plant giant goldenrod increases fungal biomass in soil and affects fungivorous nematode communities, finding a specific fungal community shift and nematode response.

9 citations

metagenomicsstatistical model

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BioinformaticsbioRxivPreprintNov 23, 2020

Conserved codon adaptation in highly expressed genes is associated with higher regularity in mRNA secondary structures

Mark G. Sterken, Ruud H. P. Wilbers, Pjotr Prins…·Lotte B. Westerhof

The paper shows that conserved codon usage in highly expressed genes correlates with reduced mRNA secondary structure variability, enhancing translation efficiency and mRNA stability.

3 citations

E. coliArabidopsis

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