Author

Helen Li

Exai Bio (United States)ORCID 0000-0002-1145-6527Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:long-read sequencing· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Aiden M. Sababi· 1 shared Alice Huang· 1 shared Amir Momen-RoknabadiiD· 1 shared Andrew W. CarrolliD· 1 shared Anna V. Hartwig· 1 shared Babak AlipanahiiD· 1 shared Babak BehsaziD· 1 shared Cory Y. McLeaniD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Aiden M. Sababi

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2 papers

Recent·Most cited

BioinformaticsNature Machine IntelligencePeer-reviewedDec 10, 2025

A multi-modal cell-free RNA language model for liquid biopsy applications

Mehran Karimzadeh, Aiden M. Sababi, Amir Momen-Roknabadi…·Hani Goodarzi

Exai-1 is a transformer-based model that integrates RNA sequence and expression data to improve cfRNA analysis for disease detection.

9 citations

long-read sequencingbulk RNA-seq

𝕏 PostBluesky

GenomicsBioinformaticsPeer-reviewedDec 15, 2020

Accurate, scalable cohort variant calls using DeepVariant and GLnexus

Taedong Yun, Helen Li, Pi-Chuan Chang…·Cory Y. McLean

The paper introduces a scalable variant-calling method using DeepVariant and GLnexus, achieving improved quality and cost savings over existing practices.

270 citationstop 1%

humanwhole-genome sequencing

𝕏 PostBluesky