Author

Marine Gautier‐Isola

Centre National de la Recherche ScientifiqueORCID 0000-0003-3768-8809Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Neuroscience· 1 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 3 Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:CRISPR screen· 1 Approach:deep learning· 1

Frequent Co-Authors

Bernard P. MariiD· 3 shared Caroline LacouxiD· 2 shared Georges VassauxiD· 2 shared Kévin LebrigandiD· 2 shared Pascal BarbryiD· 2 shared Roger RezzonicoiD· 2 shared Baharia MograbiiD· 1 shared Cédric Girard-Riboulleau· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersNeuroscience

Bernard P. MariORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

NeurosciencebioRxivPreprintSep 28, 2026

Imaging-based spatial isoform transcriptomics resolves transcript diversity at cellular and subcellular resolution

Eamon M. McAndrew, Morgane Fierville, Marine Gautier‐Isola…·Kévin Lebrigand

The paper introduces iSiT, an imaging-based spatial isoform transcriptomics method, and demonstrates its application in the mouse brain to study transcript isoform diversity at cellular and subcellular resolution.

1 citation

mousespatial transcriptomics

𝕏 PostBluesky

Pharmacology & ToxicologyArchives of ToxicologyPeer-reviewedMar 10, 2026

Single-cell transcriptomics reveals a differential response of human bronchial epithelial cell-types to cadmium chloride

Fadi Abou-Choucha, Rafaël Lopes Goncalves, Thomas Hermet…·Georges Vassaux

The paper uses scRNA-seq to analyze the response of human bronchial epithelial cell types to CdCl2, revealing cell-type-specific transcriptional changes.

DOI 10.1007/s00204-026-04344-9

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsFrontiers in BioinformaticsPeer-reviewedMar 4, 2024

A workflow combining single-cell CRISPRi screening and a Sparse supervised autoencoder neural network to detect subtle transcriptomic perturbations induced by lncRNA Knock-Down

Marin Truchi, Caroline Lacoux, Cyprien Gille…·Bernard P. Mari

The paper develops a Sparse supervised autoencoder to detect subtle transcriptomic changes from CRISPRi screens of lncRNAs in lung cancer cells under hypoxia.

5 citations

humanscRNA-seq

𝕏 PostBluesky