Alan R. Dabney

The paper performs RNA-seq analysis of Tetrahymena thermophila's cell cycle, identifying cell cycle-regulated genes and their expression patterns in distinct nuclei.

SECNVs simulates copy number variants and whole-exome sequences from reference genomes to improve comparison of detection methods.

SimulateCNVs is a software tool that simulates copy number variations in whole exome and whole genome sequencing data, producing rearranged genomes, short reads, and BAM files.