Molecular BiologybioRxivPreprint
Constrained Diffusion for Protein Design with Hard Structural Constraints
Jacob K. Christopher, Austin Seamann, Jingyi Cui…·Ferdinando Fioretto
This paper introduces a constrained diffusion framework for protein design that enforces strict structural constraints while maintaining structural diversity, achieving state-of-the-art results on motif scaffolding and pocket design tasks.
DOI 10.1101/2025.10.15.682365