Author

Eric Yao

Agricultural Research ServiceORCID 0000-0002-1472-1832Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Research Focus:database / resource· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Taner Z. SeniD· 3 shared Ian H HolmesiD· 2 shared Adriana RavagnaniiD· 1 shared Alan Howard SchulmaniD· 1 shared Amanda J. Waters· 1 shared Amanda R. Peters HaugrudiD· 1 shared Amit M. FenniD· 1 shared Anne FiebigiD· 1 shared

Activity by Year

2019-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersGenomics

Taner Z. SenORCID

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4 papers

Recent·Most cited

Genome assembly and population genomic analysis of Aegilops caudata uncover a rich source for disease and insect pest resistance for wheat improvement

Honglian Ye, Prakitchai Chotewutmontri, Naxin Huo, Hanchang Chang, Daryl L. Klindworth, Kirk Anderson, Sam Gale, Genqiao Li, Fazal Manan, Qijun Zhang, Eric Yao, Swarupa Nanda Mandal, Jennifer N. Bragg, Amanda R. Peters Haugrud, Pablo D. Olivera, , Yong Gu

This paper presents a high-quality genome assembly of Aegilops caudata and identifies novel resistance genes for wheat pests and diseases through population genomic analysis.

bioRxiv · Dec 23, 2025 · PreprintGenomics

A pangenome and pantranscriptome of hexaploid oat

Raz Avni, Nadia M. Kamal, Lidija Bitz, Eric N. Jellen, Wubishet A. Bekele, Tefera Tolera Angessa, Petri Auvinen, Oliver Bitz, Brian Boyle, Francisco José Canales, Craig H. Carlson, Brett Chapman, Harmeet Singh Chawla, Yutang Chen, Dario Copetti, , Martin Mascher

The paper presents a pangenome and pantranscriptome of hexaploid oat, describing gene expression diversity and structural genome variation across 33 accessions and six tissues.

Nature · Oct 29, 2025Peer-reviewedGenomics

JBrowse Connect: A server API to connect JBrowse instances and users

Eric Yao, Robert Buels, Taner Z. Sen, Lincoln David Stein, Ian H Holmes

JBrowse Connect enables live messaging, notifications, and user-initiated analyses in JBrowse via WebSockets, with JBlast as an example application for BLAST searches integrated with Galaxy.

PLoS Computational Biology · Aug 18, 2020Peer-reviewedBioinformatics

Apollo: Democratizing genome annotation

Nathan Dunn, Deepak Raveendran Unni, Colin M. Diesh, Monica C. Muñoz-Torres, Nomi L. Harris, Eric Yao, Helena Rasche, Ian H Holmes, Christine G. Elsik, Suzanna Lewis

Apollo is an open-source software tool that enables researchers to collaboratively annotate and refine genomic features through a graphical interface.

PLoS Computational Biology · Feb 6, 2019Peer-reviewedBioinformatics