Taner Z. Sen

This study investigates calcium-dependent conformational changes in TG2 and their role in celiac disease using molecular dynamics and nsSNP analysis.

This paper presents a high-quality genome assembly of Aegilops caudata and identifies novel resistance genes for wheat pests and diseases through population genomic analysis.

The paper presents a pangenome and pantranscriptome of hexaploid oat, describing gene expression diversity and structural genome variation across 33 accessions and six tissues.

The paper benchmarks AlphaFold, ESMFold, and Boltz in maize to assess their performance on plant proteins, finding lower confidence scores and geometry issues in less conserved proteins.

This paper applies RFdiffusion to predict interspecies protein-protein interactions between fungal pathogens and cereal crops, achieving high recall in identifying validated interactions.

The paper introduces the Fusarium Protein Toolkit, a web-based resource that provides structural models and variant effect predictions for Fusarium proteins to aid in understanding and mitigating crop diseases and mycotoxin contamination.

FASSO combines sequence and structure orthology to improve ortholog prediction across species, annotating over 270,000 functions in plant and outgroup proteomes.

FINDER automatically annotates eukaryotic genes from RNA-Seq data and associated protein sequences, improving accuracy by integrating raw reads and protein evidence.

JBrowse Connect enables live messaging, notifications, and user-initiated analyses in JBrowse via WebSockets, with JBlast as an example application for BLAST searches integrated with Galaxy.