Author

Nai-Yun Hsu

Icahn School of Medicine at Mount SinaiORCID 0000-0002-1653-2998Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1 Organism:zebrafish· 1

Frequent Co-Authors

Judy H. ChoiD· 2 shared Ling-shiang F. ChuangiD· 2 shared Alan SotoiD· 1 shared Alexander Greenstein· 1 shared Andrew KasarskisiD· 1 shared Angela Mo· 1 shared Anne Marie GriffithsiD· 1 shared Arthur MorthaiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersImmunology

Judy H. ChoORCID

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2 papers

Recent·Most cited

GM-CSF modulates conserved ILC-like transcriptional states and myeloid cell signaling during ulceration in Crohns disease

Joshua K. Morrison, Ksenija Sabic, Neha Maskey, Sayali Talware, Nai-Yun Hsu, Colleen Chasteau, Elizabeth Aslinger, Jake T. Herb, Shikha Nayar, Rachel M. Levantovsky, Christopher Tastad, Rachel E. Moss, Alan Soto, Monica Garcia-Barros, Jessy Carol Ntunzwenimana, , Ling-shiang F. Chuang

This study shows GM-CSF reduces intestinal inflammation in Crohn's disease by modulating myeloid cell signaling and ILC-like transcriptional states.

bioRxiv · Oct 14, 2026 · PreprintImmunology

Stratification of Risk of Progression to Colectomy in Ulcerative Colitis using Measured and Predicted Gene Expression

Angela Mo, Sini Nagpal, Kyle Gettler, Talin Haritunians, Mamta Giri, Yael Haberman, Rebekah A. Karns, Jarod Prince, Dalia Arafat, Nai-Yun Hsu, Ling-shiang F. Chuang, Carmen Argmann, Andrew Kasarskis, Mayte Suárez‐Fariñas, Nathan Gotman, , Greg C. Gibson

The paper uses measured and predicted gene expression to identify ulcerative colitis patients at elevated risk of colectomy, showing both methods independently replicate in multiple datasets.

bioRxiv · Apr 2, 2021 · PreprintGenetics