Author

Sanket Nagarkar

Indian Institute of Science Education and Research PuneORCID 0000-0002-1723-0633Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Developmental Biology· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Chaitanyanand B. KoppikeriD· 2 shared Devaki A. KelkariD· 2 shared Aadya Atreya· 1 shared Aditi Sanjay KhatpeiD· 1 shared Aishwarya Konnur· 1 shared Asha ReddyiD· 1 shared Ashraf ul Mannan· 1 shared Ashwini C. BapatiD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersCancer Biology

Chaitanyanand B. KoppikerORCID

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3 papers

Recent·Most cited

NELFA-mediated promoter-proximal pausing restrains YAP-driven transcription and shapes context-dependent outcomes in breast cancer

Bhavesh Vasave, Aadya Atreya, Rishabh Kulkarni, Sanket Nagarkar, Khushi Salvi, Chaitanyanand B. Koppiker, L S Shashidhara, Madhura Kulkarni

This study shows NELFA suppresses YAP-driven transcription in breast cancer, with context-dependent effects on survival outcomes.

bioRxiv · Dec 29, 2025 · PreprintCancer Biology

Assessing germline mutational profile and its clinicopathological associations in Triple Negative Breast Cancer

Jisha John, Ashwini C. Bapat, Siddharth Gahlaut, Naveen Luke Demonte, Rahul Kumar, Yashaswi Thakur, Christina Mathew, Aishwarya Konnur, Namrata P. Namewar, Ruhi R. Reddy, Sanket Nagarkar, Smeeta Nare, GEORGE V. THOMAS, Laleh Busheri, Asha Reddy, , Chaitanyanand B. Koppiker

The paper analyzes germline mutations in TNBC patients in India and identifies BRCA1/2 as the most common mutated genes, with novel mutations and a higher proportion of variants of uncertain significance in non-BRCA genes.

Cancer Genetics · Jun 18, 2025Peer-reviewedGenetic & Genomic Medicine

Genome-wide RNAi screen for context-dependent tumor suppressors identified using in vivo models for neoplasia in Drosophila

Casper Groth, Pooja M. Vaid, Aditi Sanjay Khatpe, Nelchi Prashali, Avantika Ahiya, Diāna Andrējeva, Madhumita Chakladar, Sanket Nagarkar, Rachel Paul, Devaki A. Kelkar, Teresa Eichenlaub, Héctor Herranz, Tirumalai Srinivas Sridhar, Stephen Michael Cohen, Lingadahalli Subrahmanya Shashidhara

The paper identifies tumor suppressor genes interacting with EGFR and Yki in Drosophila using RNAi screens and finds novel connections to growth regulation.

G3 Genes Genomes Genetics · Aug 1, 2020Peer-reviewedDevelopmental Biology