Author

Emily R. Eisner

University of California San DiegoORCID 0000-0002-1735-4476Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:scATAC-seq· 1 Assay:scRNA-seq· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Elizabeth W. SmootiD· 2 shared Aaron F. CarliniD· 1 shared Abbas HakimiD· 1 shared Allen WangiD· 1 shared Alma L. Lastrella· 1 shared Amanda Walster· 1 shared Anelizze Castro-Martínez· 1 shared Anna Liza M. Manlutac· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

Elizabeth W. SmootORCID

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Author profile →

2 papers

Recent·Most cited

Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging

Maria Luisa Amaral, Sainath Mamde, Michael Miller, Xiaomeng Hou, Jessica Arzavala, Julia K. Osteen, Nicholas D. Johnson, Elizabeth W. Smoot, Qian Yang, Emily R. Eisner, Qiurui Zeng, Cindy Tatiana Báez-Becerra, Jacqueline Olness, Joseph Colin Kern, Jonathan A. Rink, , Bing Ren

The paper uses single-cell epigenomics to study brain aging in mice, finding heterochromatin instability and transcription factor dysfunction across multiple brain regions and cell types.

Cell Reports · Mar 1, 2026Peer-reviewedGenomics

Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings

Victor Cantu, Karenina Sanders, Pedro Belda‐Ferre, Rodolfo A. Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G. Magallanes, Holly D. Valentine, Araz Majnoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, , Rob D. Knight

This paper tests cleaning solutions for sentinel cards to improve temporal resolution of SARS-CoV-2 monitoring in schools by distinguishing new infections from persistent viral traces.

mSystems · Jun 15, 2022Peer-reviewedBioinformatics