Author

Kyle Tretina

University of Maryland, BaltimoreORCID 0000-0002-1740-2730Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:genome assembly· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Claudia DaubenbergeriD· 2 shared Hanzel T. Gotia· 2 shared Joana Caldeira Fernandes da SilvaiD· 2 shared Joshua OrvisiD· 2 shared Nicholas C. PalmateeriD· 2 shared Olukemi O. Ifeonu· 2 shared Richard P. BishopiD· 2 shared Roger PelléiD· 2 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersGenomics

Claudia DaubenbergerORCID

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3 papers

Recent·Most cited

Synthetic BiologybioRxivPreprintJul 4, 2026

AlphaFold Database expands to proteome-scale quaternary structures

Yewon Han, Maxim I. Tsenkov, Niccolò Alberto Elia Venanzi…·Christian Dallago

The paper expands the AlphaFold Protein Structure Database to include proteome-scale quaternary structures, predicting 1.81M high-confidence protein complexes and revealing conserved structural clusters across domains of life.

11 citations

humanmouse

𝕏 PostBluesky

GenomicsPLoS neglected tropical diseasesPeer-reviewedOct 29, 2020

Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo- derived strain and reveals exceptional intra-specific genetic diversity

Nicholas C. Palmateer, Kyle Tretina, Joshua Orvis…·Joana Caldeira Fernandes da Silva

The paper develops a capture-based DNA enrichment method to assemble the first buffalo-derived T. parva genome, revealing high genetic diversity between cattle- and buffalo-associated strains.

10 citations

whole-genome sequencingexperimental assay

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GenomicsBMC GenomicsPeer-reviewedApr 3, 2020

Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms

Kyle Tretina, Roger Pellé, Joshua Orvis…·Joana Caldeira Fernandes da Silva

The paper re-annotates the Theileria parva genome, refining 53% of the proteome and uncovering a minimal N-glycosylation pathway.

22 citations

whole-genome sequencingstatistical model

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