Author

Xiyu Dong

Scripps Research InstituteORCID 0000-0002-1766-3324Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Biophysics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 3 Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Assay:structural biology· 2 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1

Frequent Co-Authors

James R. WilliamsoniD· 3 shared Dmitry LyumkisiD· 2 shared Kai ShengiD· 2 shared Sriram AiyeriD· 2 shared Anna M Popova· 1 shared Farshad Abdollah-NiaiD· 1 shared Ian J. MacRaeiD· 1 shared Joan LeeiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersBiochemistry

James R. WilliamsonORCID

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3 papers

Recent·Most cited

BiochemistryNature CommunicationsPeer-reviewedJul 18, 2025

Domain consolidation in Bacterial 50S assembly revealed by Anti-Sense Oligonucleotide Probing

Kai Sheng, Xiyu Dong, Sriram Aiyer…·James R. Williamson

The paper uses anti-sense oligonucleotides to disrupt RNA interactions in bacterial ribosome assembly, revealing intermediate structures and domain consolidation during RNP formation.

7 citations

bacteria (other)structural biology

𝕏 PostBluesky

BiophysicsNucleic Acids ResearchPeer-reviewedJul 11, 2024

Assembly of the Bacterial Ribosome with Circularly Permuted rRNA

Xiyu Dong, Kai Sheng, Luca F. R. Gebert…·James R. Williamson

This study investigates bacterial ribosome assembly using circularly permuted rRNAs, revealing conserved assembly routes and domain association order.

3 citations

bacteria (other)structural biology

𝕏 PostBluesky

MicrobiologyNucleic Acids ResearchPeer-reviewedJul 11, 2024

Complete list of canonical post-transcriptional modifications in the Bacillus subtilis ribosome and their link to RbgA driven large subunit assembly

Anna M Popova, Nikhil Jain, Xiyu Dong…·James R. Williamson

The paper identifies 25 rRNA modification sites in B. subtilis and links them to RbgA-dependent large subunit assembly.

13 citations

bacteria (other)DNA methylation

𝕏 PostBluesky