Andrew Sharpe

This study compares transcriptomes of salt-tolerant and susceptible bluebunch wheatgrass genotypes to identify molecular mechanisms underlying salt tolerance.

This paper presents haplotype-resolved genome assemblies for hybrid wheatgrass and its progenitor, revealing subgenome origins, expression bias, and reticulate evolution.

The paper presents high-quality genome assemblies of two diploid Bromus species, revealing centromeric repeats, sub-telomeric repeats, and transposable elements, and identifies population structure and hybrid genomic contributions.

This study evaluates genome prediction accuracy in Brassica napus using nested association mapping, finding that rrBLUP and RKHS models and SNaP markers improve prediction accuracy for agronomic traits.

The paper reports new genome assemblies of Camelina species, revealing subgenome dominance patterns linked to chromosomal proximity and structure in polyploid evolution.

The paper analyzes genomic variations in seven Bluebunch wheatgrass species to reveal genetic diversity, population structure, and evolutionary dynamics, identifying six genetic clusters and reticulate evolution in Eurasian species.

This paper evaluates nonlinear methods for visualizing and inferring population structure, finding graph-based algorithms like t-SNE and UMAP outperform PCA while neural networks perform worse.

This paper shows deep neural networks for genomic prediction do not estimate marker effects, instead relying on genetic relatedness.

The paper presents a chromosome-scale rye genome assembly to study genomic evolution and agronomic traits in Triticeae crops.

The paper generates high-contiguity long-read assemblies of Brassica nigra, enabling localization of active centromeres and insights into the ancestral Brassica genome.