Author

Jiří Červeň

University of OstravaORCID 0000-0002-1893-8270Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Assay:bulk RNA-seq· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Adriana VolnáiD· 4 shared Martin BartasiD· 4 shared Petr PečínkaiD· 3 shared Václav BrázdaiD· 3 shared Alessio CantaraiD· 1 shared Boas PuckeriD· 1 shared Christopher A. BeaudoiniD· 1 shared Ebbe Toftgaard PoulseniD· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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4 shared papersBioinformatics

Adriana VolnáORCID

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4 papers

Recent·Most cited

BioinformaticsBMC Research NotesPeer-reviewedJun 20, 2023

Identification of annotation artifacts concerning the CHALCONE SYNTHASE (CHS)

Martin Bartas, Adriana Volná, Jiří Červeň, Boas Pucker

The paper identifies annotation artifacts in CHS gene models of four plant species, showing they result from artificial fusions in the annotation process.

3 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky

MicrobiologyBriefings in BioinformaticsPeer-reviewedFeb 23, 2022

Unheeded SARS-CoV-2 proteins? A deep look into negative-sense RNA

Martin Bartas, Adriana Volná, Christopher A. Beaudoin…·Petr Pečínka

This study identifies potential protein-coding regions in negative-sense RNA intermediates of SARS-CoV-2 using bioinformatics and structural analysis.

25 citations

humanbulk RNA-seq

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BioinformaticsFrontiers in MicrobiologyPeer-reviewedJul 3, 2020

In-depth Bioinformatic Analyses of Human SARS-CoV-2, SARS-CoV, MERS-CoV, and Other Nidovirales Suggest Important Roles of Noncanonical Nucleic Acid Structures in Their Lifecycles

Martin Bartas, Václav Brázda, Natália Bohálová…·Petr Pečínka

The paper analyzes coronavirus genomes to identify noncanonical nucleic acid structures, finding enriched inverted repeats and G-quadruplex sites that may regulate viral RNA packaging and suggest potential drug targets.

65 citationstop 3%

humanstatistical model

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BioinformaticsbioRxivPreprintMay 6, 2020

The changes in the p53 protein across the animal kingdom pointing to its involvement in longevity

Martin Bartas, Václav Brázda, Adriana Volná…·Joanna Zawacka‐Pankau

The paper investigates amino acid variations in p53 across species and finds correlations between specific substitutions and extended lifespan.

4 citations

multiple speciesprotein sequence

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