Author

João Oliveira-Pacheco

University College DublinORCID 0000-0002-1894-3002Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:C. elegans· 1 Assay:CRISPR screen· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:perturbation response prediction· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Geraldine ButleriD· 2 shared Caoimhe E. O’BrieniD· 1 shared Chris Todd HittingeriD· 1 shared Eoin Ó CinnéideiD· 1 shared Lisa LombardiiD· 1 shared Max A. B. HaaseiD· 1 shared Óscar ZaragozaiD· 1 shared Thomas Richard RogersiD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 29 mutual co-author links

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2 shared papersGenomics

Geraldine ButlerORCID

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2 papers

Recent·Most cited

GenomicsPLoS PathogensPeer-reviewedMar 31, 2021

Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples.

Caoimhe E. O’Brien, João Oliveira-Pacheco, Eoin Ó Cinnéide…·Geraldine Butler

This study uses whole genome sequencing and phenotyping to analyze 77 C. tropicalis isolates, identifying hybrid lineages and a genomic variant affecting nitrogen utilization.

68 citationstop 2%

yeastwhole-genome sequencing

GeneticsmSpherePeer-reviewedMar 13, 2019

Plasmid-based CRISPR-Cas9 gene editing in multiple Candida species

Lisa Lombardi, João Oliveira-Pacheco, Geraldine Butler

This paper develops CRISPR-Cas9 gene editing systems for multiple Candida species using plasmids, enabling markerless editing and molecular barcode introduction.

64 citations

C. elegansCRISPR screen