Shuigeng Zhou

HPC-Atlas constructs a comprehensive atlas of human protein complexes by integrating interaction networks and identifies 9000 complexes, including 751 affected by SARS-CoV-2.

BatchServer provides a web platform for evaluating, visualizing, and correcting batch effects in omics data using autoComBat, PVCA, and UMAP.

The paper introduces DPHL, a pan-human protein mass spectrometry library built using DIA and PRM, and demonstrates its utility in identifying differentially expressed proteins in prostate cancer and DLBCL.

STREAM is an interactive pipeline for reconstructing and visualizing complex branching trajectories from single-cell transcriptomic and epigenomic data.

Rainbow-seq combines lineage tracing with single-cell RNA-seq to track cell division history and reveal transcriptome differences in mouse embryos.