Author

M. Griffin

Stanford MedicineORCID 0000-0002-2027-547XUnclaimed ORCID profile · follow to get notified of new preprints

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M. Griffin9 papers

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Jennifer B. Laufey ParkeriD· 2 shared A.D. Choudhury· 1 shared Ahmad SalehiiD· 1 shared Alan Gi-Lun ChengiD· 1 shared Ali Reza Rais Sadati· 1 shared Amanda Faith SpielmaniD· 1 shared Amber Casillas· 1 shared Andres Gottfried‐BlackmoreiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

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10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Jennifer B. Laufey ParkerORCID

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2 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedOct 28, 2025

Benchmarking Cell Type and Gene Set Annotation by Large Language Models with AnnDictionary

George Crowley, Robert C. Jones, Mark A. Krasnow…·David Seong

The paper benchmarks large language models for cell-type and gene set annotation using AnnDictionary, finding high accuracy in cell-type annotation and strong functional gene set recovery.

11 citations

bulk RNA-seqmachine learning (classical)

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GenomicsbioRxivPreprintSep 23, 2022

Allele-specific expression reveals genetic drivers of tissue regeneration in mice

Heather Elizabeth desJardins-Park, Katya L. Mack, M. Griffin…·Michael Thornton Longaker

The paper identifies cis-regulatory variation in MRL mice associated with ear regeneration using allele-specific expression analysis.

DOI 10.1101/2022.09.23.509223

mousebulk RNA-seq

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