Author

Erik Clarke

University of PennsylvaniaORCID 0000-0002-2031-8791Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrew Jesse ConnelliD· 1 shared Bryton FettiD· 1 shared Chunyu ZhaoiD· 1 shared Frederic D. BushmaniD· 1 shared Jung‐Jin LeeiD· 1 shared Kyle L. BittingeriD· 1 shared Louis J. TayloriD· 1 shared

Activity by Year

2019-2019 · peak 1/yr

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7 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Andrew Jesse ConnellORCID

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1 paper

Recent·Most cited

BioinformaticsMicrobiomePeer-reviewedMar 22, 2019

Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

Erik Clarke, Louis J. Taylor, Chunyu Zhao…·Kyle L. Bittinger

Sunbeam is a modular pipeline for metagenomic analysis that standardizes preprocessing and removes low-complexity reads, enabling reproducible and extensible workflows.

217 citationstop 1%

metagenomicsstatistical model

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