Xinyu Zhang

VaMiAnalyzer: An open source, python-based application for analysis of 3D in vitro vasculogenic mimicry assays

VaMiAnalyzer is an open-source Python tool for automated quantification of vasculogenic mimicry structures in 3D in vitro assays, providing consistent results faster than manual methods.

Programming Microbe-Computer Interaction for Customized Life-Nonlife and Cross-Life Communication

This paper designs and validates opto-interfaced microbe-computer interaction units for programmable cross-life communication in biomedical and environmental applications.

Luminescent ingestible electronic capsules for in vivo regulation of optogenetic engineered bacteria

This paper describes luminescent ingestible electronic capsules that regulate optogenetic engineered bacteria in vivo, with potential applications in treating colitis in pigs.

Establishing remote communication between human operator and engineered intestinal microbe via bio-electronic optical language

This paper establishes a bidirectional communication system between human operators and engineered intestinal microbes using bio-electronic optical signals in pigs.

Activation-induced cytidine deaminase-based in vivo continuous evolution system enables rapid protein engineering

This paper introduces PEACE, an in vivo continuous evolution system using AID-T7 PNAP to enable rapid protein engineering by coupling gene polymorphism with toxin-antitoxin growth control.