Author

Cyndi G. Geoghegan

Centre for Human GeneticsORCID 0000-0002-2124-3947Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Abby Brown· 1 shared Achyut GuleriiD· 1 shared Alasdair Short· 1 shared Alex Smiths· 1 shared Amy TrebesiD· 1 shared Andrew John KwokiD· 1 shared Angela Walsh· 1 shared Annette Nilson· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Abby Brown

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data

Richard Mayne, Shannah Secret, Cyndi G. Geoghegan, Amy Trebes, Kai Kean, Kaitlin Reid, Gu-Lung Lin, M. Azim Ansari, Mariateresa de Cesare, David Bonsall, Ivo Elliott, Paolo Piazza, Anthony Brown, James E. Bray, Julian Charles Knight, , Tanya Golubchik

Castanet is a pipeline for analyzing multi-pathogen enrichment sequencing data, providing accurate consensus sequences and metrics for pathogen detection and quantification.

Bioinformatics · Oct 1, 2024Peer-reviewedBioinformatics

eQTLs identify regulatory networks and drivers of variation in the individual response to sepsis

Katie L. Burnham, Nikhil Milind, Wanseon Lee, Andrew John Kwok, Kiki Cano-Gamez, Yuxin Mi, Cyndi G. Geoghegan, Ping Zhang, Jenni Addison, Helen F. Galley, Sally Hall, Siân Roughton, Jane Taylor, Heather M. Tennant, Nigel R. Webster, , Sarah Mappleback

The paper identifies eQTLs and regulatory networks linking genetic variation to transcriptomic responses in sepsis, highlighting key regulators like HIF1A and CEBPB.

Cell Genomics · Jun 18, 2024Peer-reviewedGenomics