Author

Nirav R. Bhakta

University of California, San FranciscoORCID 0000-0002-2135-7012Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

David J. ErleiD· 2 shared Prescott G. WoodruffiD· 2 shared Andrea J. BarczakiD· 1 shared Benjamin D WheeleriD· 1 shared Hakan ÇakmakiD· 1 shared James Foley SmithiD· 1 shared Jingming WangiD· 1 shared Karl Mark AnseliD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersImmunology

David J. ErleORCID

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2 papers

Recent·Most cited

Allergen-responsive T helper type 2 cells revealed by high-dimensional profiling in allergen challenged human airways

Benjamin D Wheeler, Jingming Wang, Srilaxmi Nerella, Kristina Johansson, Suresh Garudadri, Priscila Muñoz-Sandoval, Thomas Mazumder, Stephanie A. Christenson, Nirav R. Bhakta, David J. Erle, Karl Mark Ansel, Prescott G. Woodruff

This study identifies allergen-reactive Th2 cells in human airways using high-dimensional profiling and shows their systemic expansion following allergen challenge.

bioRxiv · Aug 6, 2026 · PreprintImmunology

Large differences in small RNA composition between human biofluids

Paula M. Godoy, Nirav R. Bhakta, Andrea J. Barczak, Hakan Çakmak, Susan J. Fisher, Tippi C. MacKenzie, Tushar C. Patel, Richard W. Price, James Foley Smith, Prescott G. Woodruff, David J. Erle

The paper compares small RNA composition across 12 human biofluids, finding large variations in miRNA and tDR levels and identifying Y RNA fragments in several biofluids.

Cell Reports · Jan 1, 2018Peer-reviewedGenomics