Author

Ryan Caldwell

Jackson LaboratoryORCID 0000-0002-2348-6352Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Julia OhiD· 3 shared Elizabeth S. Aiken· 2 shared Leonard M. MilstoneiD· 2 shared Nan Guo RingiD· 2 shared Aaron Y. KohiD· 1 shared Courtney GunteriD· 1 shared Derya UnutmaziD· 1 shared Lina KozhayaiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersMicrobiology

Julia OhORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintApr 29, 2026

Population genomics of skin Staphylococcus reveals disease-associated restructuring of species and strain diversity

Wei Zhou, Aaron Y. Koh, Morgan M. Severn…·Julia Oh

This study sequenced 2,920 skin Staphylococcus isolates to show disease selects species-level traits while reshaping strain populations and their functional diversity within hosts.

1 citation

humanwhole-genome sequencing

𝕏 PostBluesky

MicrobiologyJournal of Investigative DermatologyPeer-reviewedJun 25, 2025

Genotype-environment-driven dysbiosis in the skin microbiome of ichthyosis

Wei Lan Zhou, Nan Guo Ring, Ryan Caldwell…·Julia Oh

This study shows that ichthyosis genotype, phenotype, and host factors influence the skin microbiome's species, strain, and metabolic pathway composition.

4 citations

humanmetagenomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJun 24, 2024

BioMapAI: Artificial Intelligence Multi-Omics Framework Modeling of Myalgic Encephalomyelitis / Chronic Fatigue Syndrome

Ruoyun Xiong, Elizabeth S. Aiken, Ryan Caldwell…·Julia Oh

BioMapAI uses a deep neural network to analyze multi-omics data from ME/CFS patients, identifying biomarkers and revealing disrupted biological connections.

5 citations

humanmetagenomics

𝕏 PostBluesky