Author

Courtney Gunter

University of ConnecticutORCID 0000-0002-5203-7409Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Derya UnutmaziD· 2 shared Lina KozhayaiD· 2 shared Aishwarya JadhaviD· 1 shared Akhgar Ghassabian· 1 shared Alexander H. HoganiD· 1 shared Brandon O’SullivaniD· 1 shared Catalina De La Cruz Macias· 1 shared Christopher L. Carroll· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMicrobiology

Derya UnutmazORCID

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2 papers

Recent·Most cited

Comparison of a long-read amplicon sequencing approach to short-read amplicons for microbiome analysis

Brandon O’Sullivan, Katherine W. Herbst, Alexander H. Hogan, Michele A. Maltz, Justin David Radolf, David Lawrence, Michael A. Lynes, Juan Carlos Salazar, Joerg Graf, The Connecticut Children’s COVID Collaborative, Michael Brimacombe, Christopher L. Carroll, Kyle J. Carson, Taylor R. T. Dagenais, Catalina De La Cruz Macias, , Surender Khurana

This paper compares StrainID long-read amplicon sequencing to short-read amplicons for microbiome analysis, showing similar performance overall but better phylogenetic diversity and taxonomic classification in saliva samples.

Microbiology Spectrum · May 19, 2026Peer-reviewedMicrobiology

BioMapAI: Artificial Intelligence Multi-Omics Framework Modeling of Myalgic Encephalomyelitis / Chronic Fatigue Syndrome

Ruoyun Xiong, Elizabeth S. Aiken, Ryan Caldwell, Suzanne D. Vernon, Lina Kozhaya, Courtney Gunter, Lucinda Bateman, Derya Unutmaz, Julia Oh

BioMapAI uses a deep neural network to analyze multi-omics data from ME/CFS patients, identifying biomarkers and revealing disrupted biological connections.

bioRxiv · Jun 24, 2024 · PreprintBioinformatics