Author

Nathan I. Gamarra

Stanford UniversityORCID 0000-0002-2430-8662Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:protein structure prediction· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Aaron F. StraightiD· 2 shared Aaron StreetsiD· 2 shared Annie MaslaniD· 2 shared Jacob Price SchwartziD· 2 shared Jeremy MarcusiD· 2 shared Nicolas AltemoseiD· 2 shared Oberon Dixon-LuinenburgiD· 2 shared Cy ChittendeniD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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2 shared papersGenomics

Aaron F. StraightORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintNov 9, 2025

Integrated analysis of multimodal long-read epigenetic assays

Jeremy Marcus, Oberon Dixon-Luinenburg, Nathan I. Gamarra…·Aaron Streets

The paper introduces dimelo-toolkit, a Python package for analyzing multimodal long-read epigenetic data, demonstrating its use with a novel DiMeLo-seq protocol to study chromatin state in GM12878 cells.

3 citations

humanlong-read sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 11, 2025

DiMeLo-cito: a one-tube protocol for mapping protein-DNA interactions reveals CTCF bookmarking in mitosis

Nathan I. Gamarra, Cy Chittenden, Kousik Sundararajan…·Nicolas Altemose

DiMeLo-cito improves DiMeLo-seq by eliminating wash steps, enabling mitotic protein-DNA interaction analysis in diploid human cells and revealing CTCF bookmarking.

11 citations

humanlong-read sequencing

𝕏 PostBluesky