Author

Kun Fang

Medical College of WisconsinORCID 0000-0002-2569-8543Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Kun Fang1 paper

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Research Focus:gene regulatory network inference· 2 Assay:Hi-C· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Lavanya Choppavarapu· 3 shared Victor X. JiniD· 3 shared Tianxiang LiuiD· 2 shared Aigbe Gregory Ohihoin· 1 shared Li TianiD· 1 shared Philip A. KnightiD· 1 shared Shili LiniD· 1 shared Yufan ZhouiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 18 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Lavanya Choppavarapu

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 3, 2025

Nuc3DMap delineates finer nucleosome-based three-dimensional chromatin architecture

Kun Fang, Lavanya Choppavarapu, Tianxiang Liu…·Victor X. Jin

Nuc3DMap integrates MNase-seq, Hi-C, and Micro-C data to delineate finer nucleosome-based 3D chromatin architecture and identifies distinct subtypes of chromatin features.

DOI 10.1101/2025.04.03.647017

𝕏 PostBluesky

Cancer BiologyCell ReportsPeer-reviewedMar 18, 2025

Hi-C profiling in tissues reveals 3D chromatin-regulated breast tumor heterogeneity and tumor-specific looping-mediated biological pathways

Lavanya Choppavarapu, Kun Fang, Tianxiang Liu…·Victor X. Jin

The paper uses Hi-C profiling in breast tissues to reveal 3D chromatin-regulated tumor heterogeneity and identifies CA2 as a driver of tamoxifen resistance through enhancer-promoter looping.

16 citations

𝕏 PostBluesky

BioinformaticsNature CommunicationsPeer-reviewedSep 27, 2024

Integration of scHi-C and scRNA-seq data defines distinct 3D-regulated and biological-context dependent cell subpopulations

Yufan Zhou, Li Tian, Lavanya Choppavarapu…·Victor X. Jin

The paper integrates scHi-C and scRNA-seq data to identify 3D-regulated cell subpopulations in breast cancer, revealing new chromatin structures and biological contexts.

11 citations

𝕏 PostBluesky