Author

Miriam Schalamun

Australian National UniversityORCID 0000-0002-2640-1334Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:genome assembly· 2 Assay:long-read sequencing· 2 Organism:plant (other)· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Organism:E. coli· 1 Approach:statistical model· 1

Frequent Co-Authors

Benjamin SchwessingeriD· 3 shared David KaineriD· 3 shared Robert LanfeariD· 3 shared Alejandro Morales-SuareziD· 2 shared Weiwen WangiD· 2 shared Ashutosh DasiD· 1 shared David EcclesiD· 1 shared Eleanor BeavaniD· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersGenomics

Benjamin SchwessingerORCID

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3 papers

Recent·Most cited

GenomicsGigaSciencePeer-reviewedJan 1, 2020

The draft nuclear genome assembly of Eucalyptus pauciflora: new approaches to comparing de novo assemblies

Weiwen Wang, Ashutosh Das, David Kainer…·Robert Lanfear

The paper presents a draft genome assembly of Eucalyptus pauciflora using long and short-read data and evaluates four assemblers to identify the best assembly.

52 citations

E. coliwhole-genome sequencing

𝕏 PostBluesky

GenomicsBMC GenomicsPeer-reviewedDec 1, 2018

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

Weiwen Wang, Miriam Schalamun, Alejandro Morales-Suarez…·Robert Lanfear

The paper evaluates chloroplast genome assembly methods using Eucalyptus pauciflora, finding that hybrid long- and short-read assemblies are most accurate.

78 citations

plant (other)long-read sequencing

𝕏 PostBluesky

GenomicsMolecular Ecology ResourcesPeer-reviewedAug 17, 2018

A comprehensive toolkit to enable MinION long-read sequencing in any laboratory

Miriam Schalamun, Ramawatar Nagar, David Kainer…·Benjamin Schwessinger

The paper presents an open-source workflow for establishing MinION long-read sequencing in any laboratory, achieving >8.5 Gb of data with mean read length 13 kb and N50 26 kb.

69 citations

plant (other)long-read sequencing

𝕏 PostBluesky