Author

Shishir Kumar Patel

Johns Hopkins UniversityORCID 0000-0002-2867-2293Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:mouse· 2 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:spatial domain detection· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Hamid RabbiD· 2 shared Dee VelazqueziD· 1 shared Eesha VermaiD· 1 shared Jason Sanchez· 1 shared Jean FaniD· 1 shared Jennifer L. PluznickiD· 1 shared Jiaojiao XuiD· 1 shared Kunal GuptaiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Hamid RabbORCID

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2 papers

Recent·Most cited

Spatiotemporal transcriptomic analysis during cold ischemic injury to the murine kidney reveals compartment-specific changes

Srujan Singh, Shishir Kumar Patel, Ryo Matsuura, Dee Velazquez, Zhaoli Sun, Sanjeev Noel, Hamid Rabb, Jean Fan

The paper uses spatial transcriptomics to analyze cold ischemia injury in murine kidneys, identifying compartment-specific metabolic changes and providing an interactive browser for results.

DOAJ (DOAJ: Directory of Open Access Journals) · Jun 1, 2026Peer-reviewedBioinformatics

Microbes regulate glomerular filtration rate in health and chronic kidney disease in mice

Jiaojiao Xu, Eesha Verma, Jason Sanchez, Sepideh Gharaie, Sunyoung Jeong, Shishir Kumar Patel, Mahta Fateme Gooya, Xavier de la Rosa, Kunal Gupta, Markus Matthias Rinschen, Hamid Rabb, Jennifer L. Pluznick

This study shows that gut microbes regulate glomerular filtration rate (GFR) in mice, with their suppression increasing GFR in both healthy and chronic kidney disease models.

Journal of the American Society of Nephrology · Jul 29, 2025Peer-reviewedPhysiology