Author

Srujan Singh

Johns Hopkins UniversityORCID 0000-0002-7498-4298Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:mouse· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:proteomics· 1

Frequent Co-Authors

Hamid RabbiD· 2 shared Jean FaniD· 2 shared Ryo MatsuuraiD· 2 shared Dee VelazqueziD· 1 shared E. Thomas PashuckiD· 1 shared Kalen CliftoniD· 1 shared Kelly B. SeimsiD· 1 shared Korina Vida G. SinadiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Hamid RabbORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

STcompare: comparative spatial transcriptomics data analysis of structurally matched tissues to characterize differentially spatially patterned genes

Kalen Clifton, Vivien Jiang, Rafael dos Santos Peixoto, Srujan Singh, Ryo Matsuura, Hamid Rabb, Jean Fan

STcompare identifies differentially spatially patterned genes by comparing spatial correlation and fold-change across structurally matched tissues in spatial transcriptomics data.

Bioinformatics · Aug 26, 2026Peer-reviewedBioinformatics

Spatiotemporal transcriptomic analysis during cold ischemic injury to the murine kidney reveals compartment-specific changes

Srujan Singh, Shishir Kumar Patel, Ryo Matsuura, Dee Velazquez, Zhaoli Sun, Sanjeev Noel, Hamid Rabb, Jean Fan

The paper uses spatial transcriptomics to analyze cold ischemia injury in murine kidneys, identifying compartment-specific metabolic changes and providing an interactive browser for results.

DOAJ (DOAJ: Directory of Open Access Journals) · Jun 1, 2026Peer-reviewedBioinformatics

Design and Synthesis of Peptide-Polyester Conjugates for Cell-Mediated Scaffold Degradation

Korina Vida G. Sinad, Natasha K. Hunt, Srujan Singh, Kelly B. Seims, Yingjie Wu, E. Thomas Pashuck, Warren L. Grayson, Lesley W. Chow

This paper designs and synthesizes peptide-polyester conjugates that degrade in response to cell-mediated protease activity, enhancing tissue regeneration.

Advanced Healthcare Materials · Feb 21, 2026Peer-reviewedBioengineering