Cecilia Hong Deng

TEgenomeSimulator generates synthetic genomes with configurable transposable element landscapes, offering greater flexibility and realism compared to existing simulators.

This study systematically analyzes the EXO70 gene family in kiwifruit species, revealing evolutionary patterns and potential roles in plant immunity through interactions with RIN4_1.

PrinTE simulates genome evolution driven by transposable elements, revealing that genome size is strongly correlated with LTR retrotransposon dynamics and suggesting genome expansion followed by contraction in A. psidii.

This paper evaluates a multiplexed plant-animal SNP array for diverse applications, showing high SNP performance across species and cost savings through pooling.

The paper reports the genome of low-chill Chinese plum 'Sanyueli', identifies PsDAM6 gene variants, and links them to chilling requirement regulation in flower buds.

This paper reports the assembly of a large, highly contiguous genome for Austropuccinia psidii, revealing its expansion through transposable elements and low GC content.

The paper presents an improved genome assembly of the European pear using long-read sequencing and other techniques, resulting in a more accurate gene count.

The paper presents the first draft genome sequence of Venturia nashicola, identifying potential effector proteins that may activate non-host resistance in pear scab pathosystems.