Xinxin Zhang

Super-pangenome analysis of 3562 human and animal papillomavirus isolates illuminates their genome and pathogenicity evolution

The paper analyzes 3562 human and animal papillomavirus genomes to uncover genomic diversity, evolutionary patterns, and pathogenicity drivers, identifying key mutations and variants associated with cancer risk and prognosis.

NanoTrans: an integrated computational framework for comprehensive transcriptome analysis with Nanopore direct-RNA sequencing

NanoTrans provides a comprehensive computational framework for analyzing Nanopore direct-RNA sequencing data, covering isoform clustering, poly(A) tail length estimation, RNA modification profiling, and fusion gene detection across multiple organisms.

GetPrimers: a generalized PCR-based genetic targeting primer designer enabling easy and standardized targeted gene modification across multiple systems

GetPrimers is a computational tool for designing PCR-based genetic targeting primers, validated across multiple organisms and experimental setups.