A Portable and Scalable Genomic Analysis Pipeline for Streptococcus pneumoniae Surveillance: GPS Pipeline
Harry C. H. Hung, Narender Kumar, Victoria R. Carr, Corin Yeats, Benjamin J. Metcalf, Yuan Li, Paulina A. Hawkins, Lesley McGee, Stephen D. Bentley, Stephanie W. Lo
The paper introduces GPS Pipeline, a scalable and portable genomic analysis tool for Streptococcus pneumoniae, enabling public health outputs with minimal expertise.
Nature Communications · Sep 24, 2025Peer-reviewedGenomics