Niek De Jonge

MS2DeepScore 2.0 predicts chemical similarity between tandem mass spectra across ionization modes, improving metabolite annotation and data exploration in untargeted metabolomics.

FERMO is a dashboard that automates the prioritization of molecular features from mass spectral data to link molecules to phenotypes.

MS2Query improves metabolite annotation by combining mass spectral embeddings and precursor masses to rank analogues and exact matches more reliably and scalably.