Author

Rebecca Lee Smith

Oregon Health & Science UniversityORCID 0000-0002-3087-5639Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

James E. KorkolaiD· 2 shared Mark A. DaneiD· 2 shared AeSoon L. BenseniD· 1 shared Ajay PillaiiD· 1 shared Albert Lee· 1 shared Alexandra B. London· 1 shared Aravind SubramanianiD· 1 shared Avi Ma’ayaniD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersCancer Biology

James E. KorkolaORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJul 15, 2025

S-Nitrosylated COX-2 is a TME-regulated breast cancer biomarker of mesenchymal phenotypes

Reuben J. Hoffmann, AeSoon L. Bensen, Mark A. Dane…·Pepper S. Schedin

This study identifies SNO-COX-2 as a biomarker for mesenchymal phenotypes in breast cancer, showing its microenvironmental regulation and association with invasive growth.

DOI 10.1101/2025.07.15.664474

humanmouse

𝕏 PostBluesky

Systems BiologyCommunications BiologyPeer-reviewedOct 7, 2022

A LINCS microenvironment perturbation resource for integrative assessment of ligand-mediated molecular and phenotypic responses

Sean M. Gross, Mark A. Dane, Rebecca Lee Smith…·Laura M. Heiser

The paper presents a LINCS Microenvironment perturbation dataset cataloging transcriptional, proteomic, epigenomic, and phenotypic responses of MCF10A cells to six ligands, enabling integrative analysis of molecular and phenotypic changes.

35 citations

humanbulk RNA-seq

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