Author

Mirko Trajkovski

University of GenevaORCID 0000-0002-3152-9551Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Assay:metagenomics· 3 Research Focus:database / resource· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Silas KieseriD· 3 shared Evgeny M. ZdobnoviD· 2 shared Aaron E. DarlingiD· 1 shared Adrian FritziD· 1 shared Alessio MilaneseiD· 1 shared Alexandru Cristian· 1 shared Alexey A. GurevichiD· 1 shared Andrew S. WarreniD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersBioinformatics

Silas KieserORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Human gut microbiota subspecies carry implicit information for in-depth microbiome research

Matija Tričković, Silas Kieser, Evgeny M. Zdobnov, Mirko Trajkovski

This paper defines human gut microbiota at subspecies resolution, identifies disease-associated subspecies, and shows that subspecies-level analysis improves CRC diagnosis compared to species-level methods.

Cell Host & Microbe · Aug 1, 2025Peer-reviewedBioinformatics

Critical Assessment of Metagenome Interpretation - the second round of challenges

Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey A. Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline Brito, C. Titus Brown, Jan P. Buchmann, Aydın Buluç, , Till Strowig

The paper evaluates metagenomic software tools using realistic datasets, highlighting improvements in assembly and taxon profiling while identifying remaining challenges in virus/archaea detection and reproducibility.

Nature Methods · Apr 1, 2022Peer-reviewedBioinformatics

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue

ATLAS is a Snakemake workflow for processing metagenome data to assemble, annotate, and bin sequences into genomes and functional annotations.

BMC Bioinformatics · Jun 22, 2020Peer-reviewedBioinformatics