Author

Lia Obinu

University of SassariORCID 0000-0002-3208-323XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Organism:Arabidopsis· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrea PorcedduiD· 3 shared Urmi H. TrivediiD· 3 shared Andrea GuarracinoiD· 1 shared Heleen De WeerdiD· 1 shared Tim BoothiD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 8 mutual co-author links

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3 shared papersGenomics

Andrea PorcedduORCID

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3 papers

Recent·Most cited

The reference-free pangenome of Arabidopsis thaliana

Lia Obinu, Andrea Guarracino, Urmi H. Trivedi, Andrea Porceddu

This study constructs a reference-free pangenome of Arabidopsis thaliana using 93 assemblies, revealing gene and pseudogene diversity across geographic regions.

bioRxiv · Jun 25, 2025 · PreprintGenomics

Colora: A Snakemake Workflow for Complete Chromosome-scale De Novo Genome Assembly

Lia Obinu, Tim Booth, Heleen De Weerd, Urmi H. Trivedi, Andrea Porceddu

Colora provides a Snakemake workflow for automated, high-quality chromosome-scale de novo genome assembly using PacBio HiFi, Hi-C, and optionally ONT reads.

Bioinformatics · Apr 14, 2025Peer-reviewedGenomics

Benchmarking of Hi-C tools for scaffolding de novo genome assemblies

Lia Obinu, Urmi H. Trivedi, Andrea Porceddu

The paper benchmarks three Hi-C scaffolding tools on Arabidopsis thaliana assemblies, finding YaHS performs best.

bioRxiv · May 16, 2023 · PreprintGenomics