Urmi H. Trivedi

This study uses long-read sequencing to identify pathogenic structural variants in undiagnosed rare disease families, increasing diagnostic yield in three families.

This study constructs a reference-free pangenome of Arabidopsis thaliana using 93 assemblies, revealing gene and pseudogene diversity across geographic regions.

Colora provides a Snakemake workflow for automated, high-quality chromosome-scale de novo genome assembly using PacBio HiFi, Hi-C, and optionally ONT reads.

This study evaluates the antimicrobial efficacy of hygiene products at short contact times observed in post-pandemic handwashing behavior across four countries.

The paper presents a long-read sequencing workflow for ecological genomics education, enabling students to assemble and identify plant genomes within two weeks.

The paper benchmarks three Hi-C scaffolding tools on Arabidopsis thaliana assemblies, finding YaHS performs best.

The paper presents a telomere-to-telomere genome assembly of Oscheius tipulae and identifies ancestral chromosomal elements that inform the evolution of rhabditid nematode chromosomes.

The paper examines genomic divergence in Drosophila montana to identify cold adaptation signatures, finding 250 genes with accelerated divergence and outlier loci on the X chromosome.