Author

Krista Pipho

Duke UniversityORCID 0000-0002-3332-2618Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Organism:multiple species· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Gregory A. WrayiD· 2 shared Abdull J. MassriiD· 1 shared Alejandro BerríoiD· 1 shared Anton AfanassieviD· 1 shared David R. McClayiD· 1 shared Geoffrey R. SchiebingeriD· 1 shared Laura GreenstreetiD· 1 shared Maria ByrneiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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2 shared papersGenomics

Gregory A. WrayORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 14, 2026

HiFi-Helper: A reproducible workflow for genome assembly from HiFi reads alone

Krista Pipho, Gregory A. Wray

HiFi-Helper provides a workflow for genome assembly using HiFi reads, achieving quality comparable to older methods with less time and resources.

DOI 10.64898/2026.03.11.710913

whole-genome sequencingexperimental assay

𝕏 PostBluesky

Evolutionary BiologyGenome Biology and EvolutionPeer-reviewedNov 26, 2024

Single-cell transcriptomics reveals evolutionary reconfiguration of embryonic cell fate specification in the sea urchin Heliocidaris erythrogramma

Abdull J. Massri, Alejandro Berrío, Anton Afanassiev…·Gregory A. Wray

The paper uses single-cell RNA sequencing to compare embryonic development in two sea urchin species, identifying evolutionary changes in cell fate specification and signaling.

9 citations

multiple speciesscRNA-seq

𝕏 PostBluesky