Author

Michael Song

University of California, San FranciscoORCID 0000-0002-3355-4806Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Assay:Hi-C· 2 Organism:mouse· 2

Frequent Co-Authors

Bingkun LiiD· 3 shared Lenka MaliskovaiD· 3 shared Yin SheniD· 3 shared Yun LiiD· 3 shared Armen AbnousiiD· 2 shared Ian Richard JonesiD· 2 shared Jonathan D. RoseniD· 2 shared Ming HuiD· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Bingkun LiORCID

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Author profile →

4 papers

Recent·Most cited

GenomicsCurrent Issues in Molecular BiologyPeer-reviewedSep 17, 2021

HPRep: Quantifying reproducibility in HiChIP and PLAC-seq datasets

Jonathan D. Rosen, Yuchen Yang, Armen Abnousi…·Yun Li

HPRep quantifies reproducibility in HiChIP and PLAC-seq data by using a stratified and weighted correlation metric, outperforming existing Hi-C-based measures.

9 citations

mousehuman

𝕏 PostBluesky

GenomicsNaturePeer-reviewedOct 14, 2020

3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis

Michael Song, Mark-Phillip Pebworth, Xiaoyu Yang…·Yin Shen

This study characterizes 3D epigenomic landscapes during human corticogenesis, revealing chromatin looping and super interactive promoters involved in lineage-specific gene regulation.

151 citationstop 1%

humanChIP-seq

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GenomicsNature GeneticsPeer-reviewedJul 31, 2019

cis-Regulatory Chromatin Contacts in Neural Cells Reveal Contributions of Genetic Variants to Complex Neurological Disorders

Michael Song, Xiaoyu Yang, Xingjie Ren…·Yin Shen

The paper identifies cis-regulatory chromatin contacts in neural cells and links them to genetic variants associated with complex neurological disorders.

177 citationstop 1%

humanHi-C

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GeneticseLifePeer-reviewedMay 24, 2019

Live-Cell Imaging Reveals Enhancer-dependent Sox2 Transcription in the Absence of Enhancer Proximity

Jeffrey M Alexander, Juan Guan, Bingkun Li…·Orion David Weiner

This study uses live-cell imaging to show that Sox2 transcription occurs without requiring enhancer proximity in embryonic stem cells.

347 citationstop 1%

mouseimaging

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