Author

Aubrey E. Houser

Icahn School of Medicine at Mount SinaiORCID 0000-0002-3373-6124Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:scRNA-seq· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrew L. JiiD· 2 shared Abiha Kazmi· 1 shared Alan SotoiD· 1 shared Alexis WilderiD· 1 shared Angie Ramirez· 1 shared Benjamin UngariD· 1 shared Brian W. Ji· 1 shared Cheryl Xiang· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Andrew L. JiORCID

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2 papers

Recent·Most cited

Accurate and scalable demultiplexing of single-cell RNA sequencing using BEACON

Brian W. Ji, Marshall Lammers, Aubrey E. Houser, Nicholas Chan, Jose Rodriguez, Hannah Chae, Cheryl Xiang, Jack Bui, Hojun Li, Andrew L. Ji

BEACON improves demultiplexing accuracy in single-cell RNA sequencing by learning background counts, outperforming existing methods and enabling new biological insights.

bioRxiv · Sep 30, 2026 · PreprintBioinformatics

A single-cell spatial transcriptomic census of human skin anatomy

Paula Restrepo, Alexis Wilder, Aubrey E. Houser, Angie Ramirez, M. Grace Hren, Raman Gill, Abiha Kazmi, Larry Chen, Deniz Demircioglu, Dan Hasson, Alan Soto, Stephanie McQuillan, Edgar Gonzalez‐Kozlova, Rachel Brody, Benjamin Ungar, , Andrew L. Ji

The paper constructs a spatial transcriptomic atlas of human skin, identifying 45 cell types across 15 sites and revealing neighborhood disruptions in disease.

bioRxiv · Sep 22, 2025 · PreprintGenomics