AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts
Terézia Slanináková, Adrián Rošinec, Jakub Čillík, Aleš Křenek, Katarína Grešová, Jana Porubská, Eva Marsalkova, Jaroslav Oľha, David Procházka, Lukáš Hejtmánek, Vlastislav Dohnal, Karel Berka, Radka Svobodová Vařeková, Matej Antol
AlphaFind v2 enables fast, structure-based search across protein structures and domains, using embeddings and US-align for refinement and supporting organism and CATH-based filtering.
Nucleic Acids Research · Apr 11, 2026Peer-reviewedBioinformatics