Author

Mohamed Abuelanin

University of California, DavisORCID 0000-0002-3419-4785Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:genome assembly· 2 Organism:human· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:graph neural network· 1 Assay:Hi-C· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Gulhan KayaiD· 2 shared Jonas KorlachiD· 2 shared Megan Y. DennisiD· 2 shared Alex MakuniniD· 1 shared C. Titus BrowniD· 1 shared Christine C. Lambert· 1 shared Devanand S. ManoliiD· 1 shared Jessica TollkühniD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Gulhan KayaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Single-library chromosome-scale diploid assemblies of vole genomes resolve a species-specific duplication implicated in pair bonding

Mohamed Abuelanin, Gulhan Kaya, Juniper A. Lake, Christine C. Lambert, Melody V. Wu, Kristen M. Berendzen, Jonathan Wood, Ksenia Krasheninnikova, Nancy G. Solomon, Zoe R. Donaldson, Karen Lisa Bales, Kerstin Howe, Jonas Korlach, Devanand S. Manoli, Jessica Tollkühn, Megan Y. Dennis

The paper assembles chromosome-scale diploid genomes of prairie and meadow voles using a single-library approach, identifying a prairie-vole-specific duplication of Avpr1a associated with pair bonding.

Cell Genomics · Aug 1, 2026Peer-reviewedGenomics

CiFi: Accurate long-read chromosome conformation capture with low-input requirements

Sean P. McGinty, Gulhan Kaya, Sheina B. Sim, Alex Makunin, Renée L. Corpuz, Michael Andrew Quail, Mohamed Abuelanin, Mara Lawniczak, Scott M. Geib, Jonas Korlach, Megan Y. Dennis

CiFi improves Hi-C analysis by combining 3C with PacBio HiFi sequencing, enabling better coverage in repetitive regions and low-input samples.

Nature Communications · Dec 8, 2025Peer-reviewedGenomics

The Great Genotyper: A Graph-Based Method for Population Genotyping of Small and Structural Variants

Moustafa Shokrof, Mohamed Abuelanin, C. Titus Brown, Tamer A. Mansour

The Great Genotyper efficiently genotypes structural variants in large populations using a graph-based method, improving precision and recall while reducing computational time.

GigaScience · Jan 1, 2025Peer-reviewedGenetic & Genomic Medicine