Ksenia Krasheninnikova

Single-library chromosome-scale diploid assemblies of vole genomes resolve a species-specific duplication implicated in pair bonding

The paper assembles chromosome-scale diploid genomes of prairie and meadow voles using a single-library approach, identifying a prairie-vole-specific duplication of Avpr1a associated with pair bonding.

338 coleopteran genomes reveal exceptional rearrangement variation compared to other insect orders

From 338 beetle genomes, eight ancestral linkage groups were inferred; rearrangement rates vary widely, peaking in major radiations, and the X chromosome dates to Holometabola's ancestor.

The Vertebrate Genomes Project Phase I: A global reference genome resource

The Vertebrate Genomes Project Phase I provides high-quality reference genomes for 816 species, enabling evolutionary and conservation insights across vertebrates.

340 dipteran genomes reveal the origin of Muller elements and sex chromosomes in Diptera

The paper reconstructs ancestral linkage groups in 340 dipteran genomes to study chromosome evolution, finding conserved groups in Nematoceran lineages and chromosomal fissions in Brachycera.

A new phased assembly of the Antarctic spiny plunderfish provides novel insights into the evolution of the notothenioid radiation.

The paper presents a new phased assembly of the Antarctic spiny plunderfish and identifies genomic features linked to cold adaptation in notothenioids.

Genomics of sable (Martes zibellina) x pine marten (Martes martes) hybridization

This study resequences sable and pine marten genomes to reveal hybridization patterns, fertility, and genetic diversity, identifying candidate genes and divergence timing.

Comparative genomics and phylogenomics of the Mustelinae lineage (Mustelidae, Carnivora)

This study presents the first comprehensive comparative and phylogenomic analysis of the Mustelinae lineage, revealing genome size variation, chromosomal evolution, and demographic responses to climate cycles across ten species.

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio High Fidelity reads

MitoHiFi assembles mitochondrial genomes from PacBio HiFi reads, identifying heteroplasmy variants and excluding nuclear contaminants, and has been used to assemble 374 mitochondrial genomes.

Genome-wide analysis of drug resistant Mycobacterium tuberculosis isolates causing pulmonary and extrapulmonary tuberculosis in Russia

The paper analyzes whole-genome sequences of Mycobacterium tuberculosis isolates from pulmonary and extrapulmonary tuberculosis patients in Russia to identify genetic substrains and drug resistance patterns.

Innovative assembly strategy contributes to the understanding of evolution and conservation genetics of the critically endangered Solenodon paradoxus from the island of Hispaniola

The paper develops a genome assembly strategy for the critically endangered Solenodon paradoxus, revealing population history and genetic features.