Sara E. Zufan

This paper develops a benchmark dataset for SARS-CoV-2 amplicon sequencing to improve genomic surveillance in resource-constrained labs, finding that basecaller choice has minimal impact on consensus quality.

The paper compares two avian influenza virus incursions in Australia, showing contrasting evolutionary dynamics between H4 and H10 viruses.

This paper introduces a hybrid capture enrichment assay for whole genome sequencing of HAV, improving sensitivity and enabling outbreak investigation.

This study investigates discordant sequence data in SARS-CoV-2 whole genome sequencing to improve bioinformatic quality standards and surveillance practices.

This study characterizes the genomic structure and evolutionary history of Salmonella Typhi in Samoa, revealing dominant rare genotypes with low antimicrobial resistance.