Author

Anna L. Ellermann

University of CambridgeORCID 0000-0002-3713-2870Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Organism:mouse· 3 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Research Focus:spatial domain detection· 2 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Florian HollfelderiD· 3 shared Joachim De JongheiD· 3 shared Timo N. KohleriD· 3 shared Ayaka YanagidaiD· 2 shared Jennifer NicholsiD· 2 shared Tomasz S. KamińskiiD· 2 shared Alexander K. WinkeliD· 1 shared Alexander van OudenaardeniD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersDevelopmental Biology

Florian HollfelderORCID

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3 papers

Recent·Most cited

Developmental BiologyNature CommunicationsPeer-reviewedAug 8, 2023

spinDrop: a droplet microfluidic platform to maximise single-cell sequencing information content

Joachim De Jonghe, Tomasz S. Kamiński, David B. Morse…·Florian Hollfelder

spinDrop improves single-cell sequencing by reducing noise and increasing detection rates, enabling high-quality molecular atlases of mouse brain development and organogenesis.

62 citationstop 3%

mousescRNA-seq

Developmental BiologybioRxivPreprintMar 13, 2022

Plakoglobin is a mechanoresponsive regulator of naïve pluripotency

Timo N. Kohler, Joachim De Jonghe, Anna L. Ellermann…·Florian Hollfelder

This study shows that Plakoglobin regulates naive pluripotency in mouse ESCs through mechanosensitivity, with expression specific to the blastocyst stage in human and mouse embryos.

2 citations

mousehuman

Molecular BiologybioRxivPreprintSep 15, 2021

Droplet-based Single-cell Total RNA-seq Reveals Differential Non-Coding Expression and Splicing Patterns during Mouse Development

Fredrik Salmén, Joachim De Jonghe, Tomasz S. Kamiński…·Alexander van Oudenaarden

The paper introduces VASA-seq, a method for total single-cell RNA-seq in mice, revealing non-coding RNA expression and alternative splicing during development.

8 citations

mousescRNA-seq