Author

Ion I. Moraru

UConn HealthORCID 0000-0002-3746-9676Unclaimed ORCID profile · follow to get notified of new preprints

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Ion I. Moraru1 paper

Biology Disciplines

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Systems Biology· 4

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Research Focus:software / tool· 2 Approach:experimental assay· 1 Approach:simulation· 1

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Michael L. BlinoviD· 3 shared Bilal ShaikhiD· 2 shared James C. SchaffiD· 2 shared Jonathan R. KarriD· 2 shared Adelinde M. UhrmacheriD· 1 shared Alexander A. PatrieiD· 1 shared Athena CheniD· 1 shared Dan Dragos Vasilescu· 1 shared

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10 top collaborators · 24 mutual co-author links

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3 shared papersSystems Biology

Michael L. BlinovORCID

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4 papers

Recent·Most cited

Verification and reproducible curation of the BioModels repository

Lucian P. Smith, Rahuman S. Malik‐Sheriff, Tung V. N. Nguyen, Henning Hermjakob, Jonathan R. Karr, Bilal Shaikh, Logan Drescher, Ion I. Moraru, James C. Schaff, Eran Agmon, Alexander A. Patrie, Michael L. Blinov, Joseph L. Hellerstein, Elebeoba E. May, David Phillip Nickerson, , Herbert M. Sauro

The paper updates and corrects SED-ML files for 1055 models in BioModels to improve reproducibility and verification across simulation engines.

PLoS Computational Biology · Dec 4, 2025Peer-reviewedSystems Biology

runBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats

Bilal Shaikh, Gnaneswara Marupilla, Michael Wilson, Michael L. Blinov, Ion I. Moraru, Jonathan R. Karr

runBioSimulations provides a web platform to execute diverse computational models, enabling easier access to simulation tools and promoting reproducibility in modeling.

Nucleic Acids Research · Apr 30, 2021Peer-reviewedSystems Biology

The Roles of Space and Stochasticity in Computational Simulations of Cellular Biochemistry: Quantitative Analysis and Qualitative Insights

Margaret E. Johnson, Athena Chen, James R. Faeder, Philipp Henning, Ion I. Moraru, Martin Meier‐Schellersheim, Robert F. Murphy, Thorsten Prüstel, Julie A. Theriot, Adelinde M. Uhrmacher

The paper compares different computational methods for simulating cellular biochemistry and identifies discrepancies in results, emphasizing the need for critical evaluation of models.

bioRxiv · Jul 2, 2020 · PreprintSystems Biology

Molecular Process Diagram: a precise, scalable and compact visualization of rule-based models

Dan Dragos Vasilescu, James B. Greene, James C. Schaff, Ion I. Moraru, Michael L. Blinov

The paper introduces Molecular Process Diagrams to visually represent rule-based models with precision and clarity, extending SBGN standards for better pathway understanding.

bioRxiv · Dec 23, 2018 · PreprintSystems Biology