Author

Bas Oldenburg

Utrecht UniversityORCID 0000-0002-3962-6831Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Assay:bulk RNA-seq· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Cyriel Y. PonsioeniD· 2 shared Eelco Christiaan BrandiD· 2 shared Femke van WijkiD· 2 shared Marieke J. PierikiD· 2 shared Pieter MeysmaniD· 2 shared Romi VandoreniD· 2 shared Vincent M.L. Van DeureniD· 2 shared A Sophie Bakker· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersImmunology

Cyriel Y. PonsioenORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

ImmunologyInflammatory Bowel DiseasesPeer-reviewedApr 14, 2026

Clonal overlap and convergent clustering of T-cell receptor signatures in Crohn's disease in monozygotic twins

Eelco Christiaan Brand, Romi Vandoren, Lisanne Lutter…·Marielle J L Romberg-Camps

This study analyzes T-cell receptor repertoires in monozygotic twins with and without Crohn's disease, finding increased TCR overlap in concordant pairs and identifying eight novel TCR clusters potentially linked to the disease.

2 citationstop 5%

humanCITE-seq

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BioinformaticsbioRxivPreprintSep 30, 2025

T cell-microbiome associations captured through T cell receptor convergence analysis

Romi Vandoren, My Kieu Ha, Vincent M.L. Van Deuren…·Pieter Meysman

The paper introduces AIRRWAS, a framework to identify T cell receptor convergence with bacterial genera, revealing reproducible associations across cohorts and functional T cell responses.

1 citation

humanbulk RNA-seq

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Genetic & Genomic MedicineNature GeneticsPeer-reviewedAug 29, 2022

Sequencing of over 100,000 individuals identifies multiple genes and rare variants associated with Crohns disease susceptibility

Aleksejs Sazonovs, Christine R. Stevens, Guhan Ram Venkataraman…·Rasha Shawky

The paper identifies ten new genes with coding variants linked to Crohn's disease risk using sequencing data from over 30,000 patients and 80,000 controls.

197 citationstop 1%

humanwhole-exome sequencing

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