Author

Mark G. Poolman

Oxford Brookes UniversityORCID 0000-0002-3972-5418Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Organism:plant (other)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Adam M. FeistiD· 1 shared Adil MardinoğluiD· 1 shared Ali KaafaraniiD· 1 shared Andreas DrägeriD· 1 shared Anne RichelleiD· 1 shared Bas TeusinkiD· 1 shared Beatriz García-JiméneziD· 1 shared Benjamín J. SáncheziD· 1 shared

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2016-2023 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperSystems Biology

Adam M. FeistORCID

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3 papers

Recent·Most cited

Systems BiologybioRxivPreprintJan 11, 2023

A Novel Algorithm to Calculate Elementary Modes: Analysis of Campylobacter jejuni Metabolism

Yanica Said, Dipali Singh, Cristiana Sebu, Mark G. Poolman

The paper introduces an algorithm, LPEM, to decompose metabolic flux vectors into elementary modes and applies it to analyze Campylobacter jejuni metabolism.

DOI 10.1101/2023.01.11.521685

bacteria (other)metabolomics

Systems BiologyNature BiotechnologyPeer-reviewedMar 1, 2020

✦ In-depth digest

Memote: A community-driven effort towards a standardized genome-scale metabolic model test suite

Christian Lieven, Moritz E. Beber, Brett G. Olivier…·Cheng Zhang

Memote, open-source Python software, runs a community-maintained, partly scored test suite (consistency, biomass, annotations, optional experimental data) on SBML-encoded genome-scale metabolic models, once or through continuous integration.

509 citationstop 1%

experimental assaysoftware / tool

Systems BiologybioRxivPreprintAug 2, 2016

The intertwined metabolism of Medicago truncatula and its nitrogen fixing symbiont Sinorhizobium meliloti elucidated by genome-scale metabolic models.

Thomas Pfau, Nils Christian, Shyam K. Masakapalli…·Oliver Ebenhöh

The paper develops genome-scale metabolic models for Medicago truncatula and its symbiont Sinorhizobium meliloti to study their interlinked metabolism and the impact of oxygen availability on metabolic exchanges.

DOI 10.1101/067348

plant (other)whole-genome sequencing